Basic Information
Locus ID:
gene-QYE76_005148
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 171136654 | 171143427 | - | gene-QYE76_005148 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.82 | 140,300.17 Da | 48.51 | 72.04 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04195 | Putative gypsy type transposon | 774 | 839 | 5.9E-23 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 319 | 408 | 7.4E-13 | IPR005162 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1017 | 1033 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1011 | 1101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1037 | 1053 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 638 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051201114.1 | uncharacterized protein LOC127314651 [Lolium perenne] | 0 |
| TrEMBL | A0A2S3IRQ1 | Ribonuclease H OS=Panicum hallii OX=206008 GN=PAHAL_9G466200 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000027960 |
| Poaceae | Lolium multiflorum | 225 | gene-QYE76_000112, gene-QYE76_000237, gene-QYE76_000651 ... |
| Poaceae | Oryza sativa | 1 | ChrSy.fgenesh.mRNA.19 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr05G009620, Chr05G009630, Chr20G008400 |