Basic Information
Locus ID:
gene-QYE76_005068
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 168461748 | 168473113 | - | gene-QYE76_005068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.34 | 112,179.08 Da | 51.41 | 85.36 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 439 | 536 | 8.29765E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 139 | 229 | 2.0E-9 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 436 | 544 | 2.35E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 706 | 768 | 3.89E-12 | IPR043502 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 420 | 560 | 3.3E-18 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 697 | 826 | 6.9E-17 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 821 | 841 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 818 | 857 | - | - |
| Coils | Coil | Coil | 969 | 989 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039682991.1 | uncharacterized protein LOC120576082 [Medicago truncatula] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |