Basic Information
Locus ID:
gene-QYE76_005008
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 166143209 | 166147704 | - | gene-QYE76_005008 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.38 | 41,982.57 Da | 55.41 | 89.07 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 5.33219E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 164 | 202 | 6.4E-14 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 347 | 383 | 3.7E-9 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 8.3E-17 | IPR000626 |
| Pfam | PF09280 | XPC-binding domain | 265 | 321 | 2.8E-20 | IPR015360 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 261 | 327 | 3.01E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 336 | 390 | 1.74E-12 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 93 | 6.83E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 149 | 208 | 1.28E-10 | IPR009060 |
| Gene3D | G3DSA:1.10.10.540 | - | 254 | 321 | 1.0E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 157 | 207 | 1.2E-20 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 340 | 387 | 2.6E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 3.2E-25 | - |
| SMART | SM00165 | uba_6 | 348 | 385 | 3.8E-7 | IPR015940 |
| SMART | SM00727 | CBM | 263 | 306 | 1.0E-6 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 164 | 204 | 2.4E-5 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 390 | 1.8E-107 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 346 | 386 | 12.860156 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 19.956364 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 162 | 205 | 12.305923 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 373 | 3.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 374 | 389 | 3.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 342 | 358 | 3.3E-30 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 291 | 313 | 3.3E-30 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 115 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 239 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_047047234.1 | probable ubiquitin receptor RAD23 isoform X2 [Lolium rigidum] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A3B6KJ05 | Ubiquitin receptor RAD23 OS=Triticum aestivum OX=4565 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology