halophFGD

Basic Information

Locus ID: gene-QYE76_004923

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: Reverse transcriptase (RNA-dependent DNA polymerase)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	162736860	162740492	-	gene-QYE76_004923

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.98	54,140.98 Da	38.80	74.47	-0.46

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00098	Zinc knuckle	181	196	3.7E-7	IPR001878
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	352	450	7.4E-19	IPR013103
Pfam	PF07727	Reverse transcriptase (RNA-dependent DNA polymerase)	243	351	1.0E-35	IPR013103
SUPERFAMILY	SSF56672	DNA/RNA polymerases	244	431	4.89E-13	IPR043502
SUPERFAMILY	SSF57756	Retrovirus zinc finger-like domains	168	203	1.08E-8	IPR036875
Gene3D	G3DSA:4.10.60.10	-	172	206	3.2E-7	-
SMART	SM00343	c2hcfinal6	180	196	4.3E-5	IPR001878
ProSiteProfiles	PS50158	Zinc finger CCHC-type profile.	181	196	11.086722	IPR001878
MobiDBLite	mobidb-lite	consensus disorder prediction	126	158	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	134	158	-	-

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0008270 (zinc ion binding)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G23160.2	-
RefSeq	XP_023158131.2	uncharacterized protein LOC103653943 isoform X1 [Zea mays]
Swiss-Prot	P10978	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1
TrEMBL	Q2QV75	Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g13780 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Salicornia bigelovii	1	Sbi_jg49723
Asteraceae	Flaveria trinervia	3	Ftri16G33087, Ftri3G20908, Ftri8G30898
Poaceae	Lolium multiflorum	72	gene-QYE76_001045, gene-QYE76_002921, gene-QYE76_003125 ... gene-QYE76_003340, gene-QYE76_003915, gene-QYE76_003917, gene-QYE76_004923, gene-QYE76_005585, gene-QYE76_006139, gene-QYE76_006605, gene-QYE76_007873, gene-QYE76_008436, gene-QYE76_010084, gene-QYE76_011520, gene-QYE76_011953, gene-QYE76_012207, gene-QYE76_013020, gene-QYE76_013261, gene-QYE76_013644, gene-QYE76_014200, gene-QYE76_015017, gene-QYE76_022095, gene-QYE76_024919, gene-QYE76_025426, gene-QYE76_026897, gene-QYE76_027380, gene-QYE76_030158, gene-QYE76_030810, gene-QYE76_031198, gene-QYE76_031694, gene-QYE76_033544, gene-QYE76_034396, gene-QYE76_036129, gene-QYE76_036893, gene-QYE76_037055, gene-QYE76_037924, gene-QYE76_038468, gene-QYE76_039022, gene-QYE76_039134, gene-QYE76_043377, gene-QYE76_044275, gene-QYE76_048695, gene-QYE76_048902, gene-QYE76_049180, gene-QYE76_049287, gene-QYE76_049337, gene-QYE76_049648, gene-QYE76_050084, gene-QYE76_050146, gene-QYE76_050801, gene-QYE76_053034, gene-QYE76_057171, gene-QYE76_057271, gene-QYE76_057605, gene-QYE76_058294, gene-QYE76_058619, gene-QYE76_059435, gene-QYE76_060735, gene-QYE76_061320, gene-QYE76_061490, gene-QYE76_062413, gene-QYE76_063597, gene-QYE76_064028, gene-QYE76_064528, gene-QYE76_066514, gene-QYE76_066629, gene-QYE76_067159, gene-QYE76_067840, gene-QYE76_069241, gene-QYE76_069442, gene-QYE76_069523, gene-QYE76_069648