Basic Information
Locus ID:
gene-QYE76_004914
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 162530786 | 162544783 | + | gene-QYE76_004914 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 105,378.73 Da | 46.23 | 85.52 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 410 | 605 | 3.62934E-76 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 682 | 800 | 5.19888E-57 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 449 | 604 | 3.5E-25 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 651 | 749 | 2.1E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 200 | 290 | 2.3E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 369 | 783 | 5.45E-129 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 372 | 530 | 6.4E-68 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 615 | 690 | 8.0E-12 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 470 | 605 | 6.4E-68 | IPR043128 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 408 | 612 | 8.773122 | IPR000477 |
| Coils | Coil | Coil | 838 | 872 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A392M0H0 | RNA-directed DNA polymerase (Fragment) OS=Trifolium medium OX=97028 GN=A2U01_0001543 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_004914, gene-QYE76_025174, gene-QYE76_033823 |