Basic Information
Locus ID:
gene-QYE76_004871
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
protein kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 161485873 | 161498593 | - | gene-QYE76_004871 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.91 | 182,548.23 Da | 46.97 | 82.66 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 537 | 732 | 1.46389E-74 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 826 | 944 | 6.25979E-57 | - |
| CDD | cd00303 | retropepsin_like | 230 | 327 | 2.35663E-12 | - |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 576 | 731 | 7.9E-25 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 796 | 893 | 4.3E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 1224 | 1317 | 5.8E-11 | IPR005162 |
| SUPERFAMILY | SSF50630 | Acid proteases | 227 | 335 | 6.88E-5 | IPR021109 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 496 | 927 | 3.67E-140 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 741 | 834 | 1.3E-27 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 499 | 657 | 1.4E-67 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 211 | 349 | 5.3E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 597 | 732 | 1.4E-67 | IPR043128 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 535 | 739 | 8.773122 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1045 | 1064 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1563 | 1591 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_019098329.1 | PREDICTED: uncharacterized protein LOC109131614, partial [Camelina sativa] | 0 |
| P04323 | Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |