Basic Information
Locus ID:
gene-QYE76_004082
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 134993694 | 135007226 | + | gene-QYE76_004082 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 111,307.45 Da | 53.24 | 87.34 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 423 | 520 | 6.40155E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 123 | 213 | 2.5E-9 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 689 | 751 | 3.78E-12 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 420 | 528 | 3.17E-5 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 680 | 794 | 8.1E-17 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 404 | 541 | 3.1E-18 | IPR021109 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 774 | 810 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 787 | 802 | - | - |
| Coils | Coil | Coil | 921 | 941 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039682991.1 | uncharacterized protein LOC120576082 [Medicago truncatula] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |