Basic Information
Locus ID:
gene-QYE76_004014
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
protein kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 132617391 | 132624269 | - | gene-QYE76_004014 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 155,088.91 Da | 46.36 | 88.64 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01647 | RT_LTR | 804 | 940 | 3.32373E-33 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1034 | 1152 | 2.87636E-56 | - |
| CDD | cd00303 | retropepsin_like | 497 | 594 | 2.49005E-12 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 197 | 287 | 3.8E-9 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 867 | 939 | 3.8E-7 | IPR000477 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1003 | 1101 | 3.5E-34 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 763 | 1135 | 7.67E-109 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 494 | 602 | 5.06E-5 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 766 | 863 | 2.8E-19 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 949 | 1042 | 1.1E-27 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 874 | 946 | 5.5E-22 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 478 | 616 | 4.2E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 864 | 873 | 2.8E-19 | IPR043128 |
| Coils | Coil | Coil | 1239 | 1259 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_021744072.1 | uncharacterized protein LOC110710127 [Chenopodium quinoa] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2G9HYA0 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_04802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |