Basic Information
Locus ID:
gene-QYE76_003557
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 117512699 | 117519650 | - | gene-QYE76_003557 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.38 | 115,589.45 Da | 49.01 | 85.28 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09274 | RNase_HI_RT_Ty3 | 729 | 811 | 2.09983E-29 | - |
| CDD | cd00303 | retropepsin_like | 338 | 435 | 8.13878E-13 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 698 | 759 | 2.9E-16 | IPR041577 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 577 | 794 | 1.02E-66 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 335 | 443 | 2.56E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 319 | 459 | 5.6E-18 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 547 | 641 | 4.7E-20 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 644 | 737 | 7.3E-28 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| Coils | Coil | Coil | 898 | 918 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A2N9J5T1 | RNA-directed DNA polymerase OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS59593 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |