Basic Information
Locus ID:
gene-QYE76_003138
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 102317289 | 102325731 | + | gene-QYE76_003138 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 99,970.10 Da | 47.07 | 75.22 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 126 | 210 | 3.03329E-16 | - |
| Pfam | PF03078 | ATHILA ORF-1 family | 627 | 727 | 3.9E-5 | IPR004312 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 31 | 55 | 1.36E-5 | IPR036875 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 124 | 239 | 1.9E-10 | IPR021109 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 38 | 53 | 9.240648 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 865 | 888 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 424 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051192320.1 | uncharacterized protein LOC127305832 isoform X1 [Lolium perenne] | 0 |
| TrEMBL | A4K7M3 | RNA-directed DNA polymerase OS=Oryza sativa subsp. japonica OX=39947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 272 | gene-QYE76_000070, gene-QYE76_000854, gene-QYE76_001188 ... |