Basic Information
Locus ID:
gene-QYE76_003135
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 102015844 | 102016425 | + | gene-QYE76_003135 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.75 | 21,358.56 Da | 60.10 | 73.32 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 139 | 182 | 5.62549E-17 | - |
| Pfam | PF13639 | Ring finger domain | 139 | 182 | 8.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 138 | 187 | 5.96E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 115 | 189 | 5.0E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 139 | 181 | 0.0017 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 139 | 182 | 11.456568 | IPR001841 |
| Coils | Coil | Coil | 69 | 89 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G66160.2 | receptor homology region transmembrane domain ring H2 motif protein 1. Encodes a receptor homology region transmembrane domain, ring H2 motif protein involved in transport of storage proteins to protein storage vacuoles. Co-localizes with DIP positive vesicles. | 0 |
| RefSeq | XP_010239516.1 | probable E3 ubiquitin-protein ligase ATL45 [Brachypodium distachyon] | 0 |
| Q9M622 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=RMR1 PE=1 SV=1 | 0 | |
| TrEMBL | I1IUE2 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=104585189 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9036 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003020, gene-QYE76_003021, gene-QYE76_003134 ... |
| Poaceae | Oryza coarctata | 1 | Oco22G001950 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05200.1, LOC_Os11g05230.1, LOC_Os12g05280.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0703130, Pt_Chr0703132, Pt_Chr0703180 |
| Poaceae | Zea mays | 4 | Zm00001eb196720_P001, Zm00001eb196750_P001 ... |