Basic Information
Locus ID:
gene-QYE76_003021
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 98073285 | 98073833 | - | gene-QYE76_003021 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 19,986.19 Da | 49.03 | 76.15 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 127 | 170 | 8.68288E-16 | - |
| Pfam | PF13639 | Ring finger domain | 127 | 170 | 1.7E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 122 | 174 | 2.02E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 102 | 178 | 1.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 169 | 0.0044 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 127 | 170 | 10.409105 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 43 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09560.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_051185848.1 | uncharacterized protein LOC127299851 [Lolium perenne] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | I1IUF2 | RING-type domain-containing protein OS=Brachypodium distachyon OX=15368 GN=104585194 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg13038 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9036 |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_003020, gene-QYE76_003021, gene-QYE76_003134 ... |
| Poaceae | Oryza coarctata | 1 | Oco22G001950 |
| Poaceae | Oryza sativa | 3 | LOC_Os11g05200.1, LOC_Os11g05230.1, LOC_Os12g05280.1 |
| Poaceae | Puccinellia tenuiflora | 3 | Pt_Chr0703130, Pt_Chr0703132, Pt_Chr0703180 |
| Poaceae | Zea mays | 4 | Zm00001eb196720_P001, Zm00001eb196750_P001 ... |