HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: gene-QYE76_002965
Species & Taxonomic ID: Lolium multiflorum & 4521
Genome Assembly: GCA_030979885.1
Description: Belongs to the TUB family
Maps and Mapping Data
Chromosome Start End Strand ID
chr5 96071029 96071832 + gene-QYE76_002965
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.24 18,417.70 Da 61.32 82.92 -0.24
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00646 F-box domain 52 105 8.1E-13 IPR001810
SUPERFAMILY SSF81383 F-box domain 44 97 2.09E-7 IPR036047
Gene3D G3DSA:1.20.1280.50 - 48 101 3.9E-6 -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K19600 (tubby and related proteins)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G76900.1 tubby like protein 1. Member of TLP family 0
RefSeq XP_047047357.1 tubby-like F-box protein 14 [Lolium rigidum] 0
Swiss-Prot Q53PP5 Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP13 PE=2 SV=1 0
TrEMBL A0A8R7UHF9 F-box domain-containing protein OS=Triticum urartu OX=4572 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network
🔍 Protein-Protein Interaction Network
Orthology
Family Species Count Orthologous Genes
Apiaceae Apium graveolens 1 Ag2G01022
Brassicaceae Arabidopsis thaliana 1 AT1G61940.1
Casuarinaceae Casuarina equisetifolia 1 Ceq04G0698
Poaceae Lolium multiflorum 1 gene-QYE76_002965
Poaceae Puccinellia tenuiflora 1 Pt_Chr0700123
Poaceae Zea mays 2 Zm00001eb109230_P001, Zm00001eb110940_P001
Poaceae Zoysia japonica 3 nbis-gene-155, nbis-gene-33195, nbis-gene-56612
Poaceae Zoysia macrostachya 1 Zma_g3633
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.