Basic Information
Locus ID:
gene-QYE76_002174
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 65912692 | 65918821 | + | gene-QYE76_002174 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 14,284.64 Da | 34.48 | 65.92 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 83 | 124 | 1.0E-11 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 91 | 2.71E-21 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 84 | 123 | 1.09E-9 | IPR012340 |
| Gene3D | G3DSA:2.30.30.30 | - | 2 | 83 | 1.9E-29 | IPR014722 |
| Gene3D | G3DSA:2.40.50.140 | - | 84 | 126 | 1.0E-12 | - |
| SMART | SM01376 | eIF_5a_2 | 83 | 130 | 0.0019 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 17 | 119 | 1.1E-26 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 126 | 4.3E-39 | IPR001884 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_051191274.1 | eukaryotic translation initiation factor 5A-1-like [Lolium perenne] | 0 |
| Q9XI91 | Eukaryotic translation initiation factor 5A-1 OS=Arabidopsis thaliana OX=3702 GN=ELF5A-1 PE=1 SV=1 | 0 | |
| TrEMBL | B3TLM2 | Eukaryotic translation initiation factor 5A OS=Elaeis guineensis var. tenera OX=51953 GN=LOC105034691 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology