Basic Information
Locus ID:
gene-QYE76_001965
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 59601155 | 59606545 | - | gene-QYE76_001965 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.70 | 94,318.93 Da | 41.04 | 64.56 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00098 | Zinc knuckle | 307 | 323 | 8.7E-5 | IPR001878 |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 503 | 654 | 3.9E-10 | IPR012871 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 435 | 493 | 1.0E-9 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 114 | 248 | 6.2E-20 | - |
| Pfam | PF07893 | Protein of unknown function (DUF1668) | 675 | 830 | 2.4E-42 | IPR012871 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 295 | 329 | 4.49E-7 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 301 | 392 | 2.3E-5 | - |
| SMART | SM00343 | c2hcfinal6 | 307 | 323 | 0.0011 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 308 | 323 | 9.603271 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 45 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 255 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 64 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 247 | 303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051190505.1 | uncharacterized protein LOC127303839 [Lolium perenne] | 0 |
| TrEMBL | Q8LN71 | Putative polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBb0091N21.45 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1953 |
| Poaceae | Lolium multiflorum | 59 | gene-QYE76_000611, gene-QYE76_000731, gene-QYE76_000814 ... |