Basic Information
Locus ID:
gene-QYE76_001923
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 58103624 | 58124251 | - | gene-QYE76_001923 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 177,469.64 Da | 47.37 | 85.67 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 783 | 880 | 1.34287E-12 | - |
| CDD | cd09274 | RNase_HI_RT_Ty3 | 1245 | 1363 | 2.98781E-56 | - |
| CDD | cd01647 | RT_LTR | 1025 | 1151 | 4.12508E-32 | - |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1214 | 1312 | 6.0E-34 | IPR041577 |
| Pfam | PF03732 | Retrotransposon gag protein | 483 | 573 | 3.0E-9 | IPR005162 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1078 | 1150 | 3.4E-7 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 263 | 412 | 3.26E-31 | IPR043502 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1023 | 1346 | 4.0E-97 | IPR043502 |
| Gene3D | G3DSA:3.30.70.270 | - | 310 | 394 | 4.2E-19 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1075 | 1084 | 1.9E-9 | IPR043128 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 764 | 905 | 1.2E-16 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 1085 | 1157 | 2.5E-22 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 1160 | 1253 | 2.7E-27 | IPR043128 |
| Gene3D | G3DSA:3.30.70.270 | - | 216 | 308 | 7.4E-8 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 1021 | 1074 | 1.9E-9 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1395 | 1426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1411 | 1426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 65 | - | - |
| Coils | Coil | Coil | 1545 | 1565 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048538050.1 | uncharacterized protein LOC125516778, partial [Triticum urartu] | 0 |
| Q8I7P9 | Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1 | 0 | |
| TrEMBL | A0A8B8ZE69 | RNA-directed DNA polymerase OS=Phoenix dactylifera OX=42345 GN=LOC120104748 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |