Basic Information
Locus ID:
gene-QYE76_001411
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 39778990 | 39782540 | - | gene-QYE76_001411 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 66,457.53 Da | 51.89 | 84.43 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 262 | 554 | 1.18219E-58 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 474 | 511 | 0.0018 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 307 | 342 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 261 | 297 | 7.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 346 | 384 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 518 | 554 | 4.2E-8 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 256 | 554 | 2.24E-69 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 253 | 516 | 3.1E-63 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 517 | 571 | 3.2E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 470 | 512 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 303 | 342 | 7.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 386 | 426 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 427 | 466 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 258 | 297 | 5.4E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 4.5E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 515 | 555 | 1.4E-11 | IPR001680 |
| SMART | SM00668 | ctlh | 93 | 150 | 2.3E-6 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 310 | 351 | 14.78598 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 265 | 299 | 10.311051 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 310 | 347 | 11.286501 | - |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 93 | 150 | 10.478893 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 522 | 564 | 15.253835 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 60 | 92 | 8.592855 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 265 | 306 | 12.647216 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 522 | 557 | 11.998316 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 598 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 564 | 598 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08560.1 | transducin family protein / WD-40 repeat family protein. | 0 |
| RefSeq | XP_051184964.1 | WD repeat-containing protein 26 homolog [Lolium perenne] | 0 |
| Q9FNN2 | WD repeat-containing protein 26 homolog OS=Arabidopsis thaliana OX=3702 GN=WDR26 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8I6XU48 | WD repeat-containing protein 26-like OS=Hordeum vulgare subsp. vulgare OX=112509 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology