Basic Information
Locus ID:
gene-QYE76_001332
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 37183619 | 37191332 | + | gene-QYE76_001332 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.45 | 103,371.88 Da | 46.67 | 87.61 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 18 | 133 | 4.57297E-51 | - |
| CDD | cd00303 | retropepsin_like | 261 | 358 | 4.69019E-13 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 528 | 704 | 3.0E-36 | IPR043502 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 519 | 607 | 3.1E-16 | - |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 242 | 383 | 1.4E-17 | IPR021109 |
| Gene3D | G3DSA:3.30.70.270 | - | 608 | 676 | 3.9E-14 | IPR043128 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 912 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 895 | 912 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_048602259.1 | uncharacterized protein LOC125580969, partial [Brassica napus] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HSD1 | RNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_06869 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 258 | gene-QYE76_000048, gene-QYE76_001332, gene-QYE76_001432 ... |