Basic Information
Locus ID:
gene-QYE76_001129
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
DnaJ molecular chaperone homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 30638668 | 30646463 | + | gene-QYE76_001129 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.48 | 66,621.83 Da | 30.35 | 61.52 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 378 | 502 | 1.6E-15 | - |
| Pfam | PF00098 | Zinc knuckle | 554 | 569 | 2.8E-4 | IPR001878 |
| Pfam | PF03732 | Retrotransposon gag protein | 90 | 183 | 3.7E-16 | IPR005162 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 541 | 574 | 1.92E-8 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 521 | 577 | 9.1E-7 | - |
| SMART | SM00343 | c2hcfinal6 | 553 | 569 | 0.0023 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 554 | 569 | 9.471408 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 246 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 230 | 246 | - | - |
| Coils | Coil | Coil | 484 | 504 | - | - |
| Coils | Coil | Coil | 587 | 587 | - | - |
| Coils | Coil | Coil | 198 | 218 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051199985.1 | uncharacterized protein LOC127313537 [Lolium perenne] | 0 |
| TrEMBL | A0A453I8F0 | CCHC-type domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Atriplex hortensis | 1 | Ah030472 |
| Poaceae | Lolium multiflorum | 226 | gene-QYE76_000514, gene-QYE76_000718, gene-QYE76_000828 ... |