Basic Information
Locus ID:
gene-QYE76_000950
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 24553492 | 24558313 | - | gene-QYE76_000950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.55 | 81,917.00 Da | 44.39 | 94.96 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 354 | 451 | 8.09408E-13 | - |
| Pfam | PF03732 | Retrotransposon gag protein | 134 | 224 | 5.9E-10 | IPR005162 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 591 | 653 | 4.56E-12 | IPR043502 |
| SUPERFAMILY | SSF50630 | Acid proteases | 351 | 459 | 1.69E-5 | IPR021109 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 335 | 472 | 1.4E-17 | IPR021109 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 582 | 691 | 9.5E-17 | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_030443756.1 | uncharacterized protein LOC115666104 [Syzygium oleosum] | 0 |
| TrEMBL | A0A2Z6PWT2 | Retrotrans_gag domain-containing protein (Fragment) OS=Trifolium subterraneum OX=3900 GN=TSUD_418330 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 203 | gene-QYE76_000478, gene-QYE76_000950, gene-QYE76_001438 ... |