Basic Information
Locus ID:
gene-QYE76_000848
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 21562048 | 21565533 | - | gene-QYE76_000848 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.62 | 71,559.41 Da | 44.93 | 96.05 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 80 | 186 | 3.0E-16 | - |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 534 | 664 | 3.4E-44 | IPR013103 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 534 | 664 | 5.34E-10 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 361 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 430 | 467 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 493 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_044973852.1 | uncharacterized protein LOC123441515 [Hordeum vulgare subsp. vulgare] | 0 |
| Q9ZT94 | Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1 | 0 | |
| TrEMBL | A0A0E0BWA9 | CCHC-type domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 30 | gene-QYE76_000020, gene-QYE76_000848, gene-QYE76_001346 ... |