Basic Information
Locus ID:
gene-QYE76_000717
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 17188445 | 17189128 | - | gene-QYE76_000717 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.75 | 21,357.56 Da | 40.49 | 52.46 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF90229 | CCCH zinc finger | 111 | 143 | 8.37E-6 | IPR036855 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 140 | 182 | 4.03E-9 | IPR036322 |
| Gene3D | G3DSA:2.30.30.1190 | - | 104 | 137 | 3.7E-5 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 138 | 195 | 3.2E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 138 | 177 | 8.9E-6 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 108 | 133 | 0.0019 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 24 | 48 | 0.52 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 145 | 177 | 10.23196 | - |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 106 | 134 | 13.544341 | IPR000571 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 145 | 186 | 13.181907 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 23 | 49 | 9.985872 | IPR000571 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G25440.1 | zinc finger WD40 repeat protein 1. | 0 |
| RefSeq | XP_047081749.1 | zinc finger CCCH domain-containing protein 17-like [Lolium rigidum] | 0 |
| Q0DYP5 | Zinc finger CCCH domain-containing protein 17 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0677700 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0Q3JQD0 | Zinc finger CCCH domain-containing protein 48 OS=Brachypodium distachyon OX=15368 GN=100845392 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology