Basic Information
Locus ID:
gene-QYE76_000438
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked Lys-48-linked is involved in protein degradation via the proteasome. Linear polymer chains formed via attachment by the initiator Met lead to cell signaling. Ubiquitin is usually conjugated to Lys residues of target proteins, however, in rare cases, conjugation to Cys or Ser residues has been observed. When polyubiquitin is free (unanchored-polyubiquitin), it also has distinct roles, such as in activation of protein kinases, and in signaling (By similarity)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 9400102 | 9402141 | + | gene-QYE76_000438 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 13,012.91 Da | 37.37 | 99.20 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 22 | 64 | 1.9E-7 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 6 | 65 | 5.07E-9 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 18 | 70 | 2.8E-12 | - |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 11 | 67 | 11.986567 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 22 | 42 | 2.4E-10 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 43 | 63 | 2.4E-10 | IPR019956 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37640.1 | ubiquitin 9. polyubiquitin gene with 4 ubiquitin repeats. The first ubiquitin repeat has 16 amino acid replacements. | 0 |
| RefSeq | XP_010914705.1 | ubiquitin-40S ribosomal protein S27a isoform X3 [Elaeis guineensis] | 0 |
| P0CH06 | Ubiquitin-ribosomal protein eL40A fusion protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ubi1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A383W3Z4 | Ubiquitin-like domain-containing protein (Fragment) OS=Tetradesmus obliquus OX=3088 GN=BQ4739_LOCUS12043 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_000262, gene-QYE76_000265, gene-QYE76_000430 ... |