Basic Information
Locus ID:
gene-QYE76_000261
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 4538042 | 4538395 | + | gene-QYE76_000261 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.76 | 13,335.07 Da | 30.66 | 89.83 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00240 | Ubiquitin family | 12 | 81 | 1.9E-15 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 2 | 84 | 6.76E-18 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 105 | 3.1E-21 | - |
| SMART | SM00213 | ubq_7 | 1 | 80 | 7.4E-11 | IPR000626 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 84 | 18.366758 | IPR000626 |
| PRINTS | PR00348 | Ubiquitin signature | 36 | 56 | 3.7E-9 | IPR019956 |
| PRINTS | PR00348 | Ubiquitin signature | 15 | 35 | 3.7E-9 | IPR019956 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35635.1 | ubiquitin 7. encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. | 0 |
| RefSeq | XP_002506532.1 | predicted protein [Micromonas commoda] | 0 |
| P0C073 | Ubiquitin-NEDD8-like protein RUB1 OS=Deschampsia antarctica OX=159298 GN=RUB1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A812WIH3 | TU20 protein OS=Symbiodinium sp. CCMP2592 OX=631055 GN=TU20 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000261, gene-QYE76_000436, gene-QYE76_000441 |