halophFGD

Basic Information

Locus ID: gene-QYE76_000184

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: zinc-RING finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	1839680	1842550	+	gene-QYE76_000184

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.62	45,821.20 Da	60.42	86.60	-0.23

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16745	RING-HC_AtRMA_like	35	77	7.42082E-22	-
Pfam	PF07893	Protein of unknown function (DUF1668)	192	326	1.3E-23	IPR012871
Pfam	PF00097	Zinc finger, C3HC4 type (RING finger)	35	75	1.3E-4	IPR018957
SUPERFAMILY	SSF57850	RING/U-box	32	88	7.28E-14	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	24	89	1.2E-13	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	35	76	10.92546	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	50	59	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	142	161	-	-

Gene Ontology

Molecular Function:

GO:0046872 (metal ion binding)

KEGG Pathway

KO Term:

K10666 (E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23780.1	RING/U-box superfamily protein.
RefSeq	XP_047046962.1	E3 ubiquitin-protein ligase RNF5-like [Lolium rigidum]
Swiss-Prot	Q09463	E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1
TrEMBL	K3Z8Z7	RING-type E3 ubiquitin transferase OS=Setaria italica OX=4555 GN=101782523 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	24	AH02.3348, AH03.1478, AH03.2495, AH04.205, AH06.2931 ... AH09.2277, BH03.1182, BH04.211, BH05.142, BH05.153, BH05.154, BH05.345, BH06.59, BH07.422, BH09.2465, CH04.216, CH05.202, CH05.401, CH05.402, CH05.405, CH06.3099, CH09.2605, CH09.2606, CH09.603
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_3AG0208570, gene-QOZ80_3AG0208580 ... gene-QOZ80_3BG0253680, gene-QOZ80_3BG0253690, gene-QOZ80_5AG0379900, gene-QOZ80_5AG0379990, gene-QOZ80_5BG0426950, gene-QOZ80_5BG0427060, gene-QOZ80_5BG0427500, gene-QOZ80_5BG0427510, gene-QOZ80_6AG0540520, gene-QOZ80_6AG0540610, gene-QOZ80_6AG0540620, gene-QOZ80_6BG0493840, gene-QOZ80_6BG0493850, gene-QOZ80_6BG0494250
Poaceae	Lolium multiflorum	2	gene-QYE76_000182, gene-QYE76_000184
Poaceae	Oryza coarctata	6	Oco01G007980, Oco01G012320, Oco02G008270, Oco02G012460 ... Oco04G005760, Oco21G000830
Poaceae	Oryza sativa	11	LOC_Os01g05540.1, LOC_Os01g05560.1, LOC_Os02g10450.1 ... LOC_Os02g10460.1, LOC_Os04g13460.1, LOC_Os10g19230.1, LOC_Os11g04750.1, LOC_Os11g04760.1, LOC_Os12g04530.1, LOC_Os12g04540.1, LOC_Os12g28090.1
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205117, Pt_Chr0206485, Pt_Chr0206765
Poaceae	Sporobolus alterniflorus	1	Chr19G011890
Poaceae	Thinopyrum elongatum	2	Tel3E01G668700, Tel5E01G820000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3BG041200, gene_TRIDC3BG041270 ... gene_TRIDC3BG067490, gene_TRIDC4AG052080, gene_TRIDC6AG032870, gene_TRIDC6AG032880
Poaceae	Triticum aestivum	13	TraesCS1B02G314200.1, TraesCS1D02G303300.1.cds1 ... TraesCS3B02G274400.1.cds1, TraesCS3B02G457000.1.cds1, TraesCS3D02G416900.1.cds1, TraesCS6A02G212500.1, TraesCS6A02G212600.1, TraesCS6B02G242100.1, TraesCS6B02G242200.1, TraesCS6B02G242300.3.cds1, TraesCS6B02G242400.1, TraesCS6B02G242500.1, TraesCS6B02G431200.1.cds1
Poaceae	Zea mays	1	Zm00001eb399700_P001
Poaceae	Zoysia japonica	3	nbis-gene-25719, nbis-gene-25738, nbis-gene-25739
Poaceae	Zoysia macrostachya	2	Zma_g24675, Zma_g24688