halophFGD

Basic Information

Locus ID: gene-QYE76_000182

Species & Taxonomic ID: Lolium multiflorum & 4521

Genome Assembly: GCA_030979885.1

Description: zinc-RING finger domain

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr5	1810961	1812538	+	gene-QYE76_000182

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.96	58,903.62 Da	56.94	81.45	-0.27

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16745	RING-HC_AtRMA_like	15	59	1.85218E-25	-
Pfam	PF07893	Protein of unknown function (DUF1668)	150	451	3.6E-41	IPR012871
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	16	62	8.6E-8	-
SUPERFAMILY	SSF57850	RING/U-box	14	70	3.38E-16	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	4	71	2.3E-16	IPR013083
SMART	SM00184	ring_2	17	57	1.3E-6	IPR001841
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	17	58	13.182669	IPR001841
ProSitePatterns	PS00518	Zinc finger RING-type signature.	32	41	-	IPR017907
MobiDBLite	mobidb-lite	consensus disorder prediction	98	139	-	-

KEGG Pathway

KO Term:

K10666 (E3 ubiquitin-protein ligase RNF5/185 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G23780.1	RING/U-box superfamily protein.
RefSeq	XP_044346343.1	uncharacterized protein LOC123067744, partial [Triticum aestivum]
Swiss-Prot	Q96GF1	E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens OX=9606 GN=RNF185 PE=1 SV=1
TrEMBL	A0A3B6FND4	DUF1618 domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	24	AH02.3348, AH03.1478, AH03.2495, AH04.205, AH06.2931 ... AH09.2277, BH03.1182, BH04.211, BH05.142, BH05.153, BH05.154, BH05.345, BH06.59, BH07.422, BH09.2465, CH04.216, CH05.202, CH05.401, CH05.402, CH05.405, CH06.3099, CH09.2605, CH09.2606, CH09.603
Poaceae	Eleusine coracana subsp. coracana	16	gene-QOZ80_3AG0208570, gene-QOZ80_3AG0208580 ... gene-QOZ80_3BG0253680, gene-QOZ80_3BG0253690, gene-QOZ80_5AG0379900, gene-QOZ80_5AG0379990, gene-QOZ80_5BG0426950, gene-QOZ80_5BG0427060, gene-QOZ80_5BG0427500, gene-QOZ80_5BG0427510, gene-QOZ80_6AG0540520, gene-QOZ80_6AG0540610, gene-QOZ80_6AG0540620, gene-QOZ80_6BG0493840, gene-QOZ80_6BG0493850, gene-QOZ80_6BG0494250
Poaceae	Lolium multiflorum	2	gene-QYE76_000182, gene-QYE76_000184
Poaceae	Oryza coarctata	6	Oco01G007980, Oco01G012320, Oco02G008270, Oco02G012460 ... Oco04G005760, Oco21G000830
Poaceae	Oryza sativa	11	LOC_Os01g05540.1, LOC_Os01g05560.1, LOC_Os02g10450.1 ... LOC_Os02g10460.1, LOC_Os04g13460.1, LOC_Os10g19230.1, LOC_Os11g04750.1, LOC_Os11g04760.1, LOC_Os12g04530.1, LOC_Os12g04540.1, LOC_Os12g28090.1
Poaceae	Puccinellia tenuiflora	3	Pt_Chr0205117, Pt_Chr0206485, Pt_Chr0206765
Poaceae	Sporobolus alterniflorus	1	Chr19G011890
Poaceae	Thinopyrum elongatum	2	Tel3E01G668700, Tel5E01G820000
Poaceae	Triticum dicoccoides	6	gene_TRIDC3BG041200, gene_TRIDC3BG041270 ... gene_TRIDC3BG067490, gene_TRIDC4AG052080, gene_TRIDC6AG032870, gene_TRIDC6AG032880
Poaceae	Triticum aestivum	13	TraesCS1B02G314200.1, TraesCS1D02G303300.1.cds1 ... TraesCS3B02G274400.1.cds1, TraesCS3B02G457000.1.cds1, TraesCS3D02G416900.1.cds1, TraesCS6A02G212500.1, TraesCS6A02G212600.1, TraesCS6B02G242100.1, TraesCS6B02G242200.1, TraesCS6B02G242300.3.cds1, TraesCS6B02G242400.1, TraesCS6B02G242500.1, TraesCS6B02G431200.1.cds1
Poaceae	Zea mays	1	Zm00001eb399700_P001
Poaceae	Zoysia japonica	3	nbis-gene-25719, nbis-gene-25738, nbis-gene-25739
Poaceae	Zoysia macrostachya	2	Zma_g24675, Zma_g24688