Basic Information
Locus ID:
gene-QYE76_000020
Species & Taxonomic ID:
Lolium multiflorum & 4521
Genome Assembly:
GCA_030979885.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| unplaced_390 | 263497 | 267601 | - | gene-QYE76_000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.45 | 62,612.49 Da | 44.25 | 75.57 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 490 | 585 | 4.4E-32 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 78 | 206 | 1.0E-16 | - |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 490 | 585 | 3.82E-5 | IPR043502 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 216 | 282 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 405 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 231 | 276 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_051218595.1 | uncharacterized protein LOC127335897 [Lolium perenne] | 0 |
| Q94HW2 | Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1 | 0 | |
| TrEMBL | Q33BH1 | Retrotransposon protein, putative, Ty1-copia subclass, expressed OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os10g01910 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 30 | gene-QYE76_000020, gene-QYE76_000848, gene-QYE76_001346 ... |