Basic Information
Locus ID:
gene-QOZ80_UnG0726010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
GAG-pre-integrase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold_160 | 21539 | 26318 | - | gene-QOZ80_UnG0726010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 171,657.03 Da | 43.56 | 76.64 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1403 | 1542 | 3.93716E-68 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 594 | 660 | 8.1E-14 | IPR025724 |
| Pfam | PF00665 | Integrase core domain | 676 | 775 | 5.3E-13 | IPR001584 |
| Pfam | PF00098 | Zinc knuckle | 406 | 422 | 3.3E-6 | IPR001878 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1075 | 1318 | 6.9E-99 | IPR013103 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 690 | 840 | 1.1E-45 | IPR012337 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 388 | 431 | 1.1E-9 | IPR036875 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1075 | 1510 | 8.0E-31 | IPR043502 |
| Gene3D | G3DSA:4.10.60.10 | - | 382 | 436 | 5.2E-8 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 668 | 846 | 9.6E-45 | IPR036397 |
| SMART | SM00343 | c2hcfinal6 | 406 | 422 | 3.1E-5 | IPR001878 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 407 | 422 | 10.42741 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 662 | 838 | 26.717726 | IPR001584 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 402 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 972 | 990 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 154 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 934 | 1010 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 357 | 371 | - | - |
| Coils | Coil | Coil | 90 | 110 | - | - |
| Coils | Coil | Coil | 8 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_040254454.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | Q9AY40 | Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 4 | Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240 |
| Brassicaceae | Brassica nigra | 3 | BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029076, Pov_00039561 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ... |
| Poaceae | Eleusine coracana subsp. coracana | 85 | gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ... |
| Poaceae | Oryza coarctata | 2 | Oco06G010700, Oco21G004780 |
| Poaceae | Sporobolus alterniflorus | 17 | Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ... |
| Poaceae | Zoysia japonica | 66 | nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3359 |