Basic Information
Locus ID:
gene-QOZ80_9BG0718670
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Type III restriction enzyme, res subunit
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 61650025 | 61656534 | + | gene-QOZ80_9BG0718670 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.65 | 126,029.06 Da | 59.64 | 55.89 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 781 | 910 | 1.30173E-61 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 586 | 756 | 1.7E-47 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 793 | 901 | 4.3E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 634 | 917 | 5.8E-75 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 20 | 56 | 3.03E-7 | IPR036020 |
| Gene3D | G3DSA:3.40.50.300 | - | 773 | 944 | 7.1E-59 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 540 | 772 | 4.9E-86 | IPR027417 |
| SMART | SM00487 | ultradead3 | 581 | 784 | 2.1E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 821 | 901 | 2.5E-32 | IPR001650 |
| SMART | SM00456 | ww_5 | 24 | 55 | 1.9E-4 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 23 | 55 | 10.9944 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 562 | 590 | 11.016736 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 593 | 767 | 30.704212 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 796 | 940 | 25.392357 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 713 | 721 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 29 | 53 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 157 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1137 | 1165 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 207 | 295 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 206 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 76 | 146 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_034569541.1 | DEAD-box ATP-dependent RNA helicase 40-like isoform X1 [Setaria viridis] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UJ05 | DEAD-box ATP-dependent RNA helicase 40 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_25823 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology