Basic Information
Locus ID:
gene-QOZ80_9BG0718310
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 61383515 | 61388201 | - | gene-QOZ80_9BG0718310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.52 | 68,661.68 Da | 38.62 | 74.68 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 198 | 395 | 1.14246E-100 | - |
| CDD | cd18794 | SF2_C_RecQ | 396 | 529 | 2.06755E-63 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 206 | 375 | 2.8E-15 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 532 | 601 | 2.4E-12 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 413 | 519 | 5.4E-19 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 244 | 540 | 8.44E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 396 | 604 | 4.2E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 395 | 4.9E-83 | IPR027417 |
| SMART | SM00487 | ultradead3 | 200 | 404 | 8.1E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 438 | 520 | 5.2E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 198 | 603 | 1.1E-155 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 212 | 388 | 20.581497 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 410 | 560 | 19.969788 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 327 | 336 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 130 | 164 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UK77 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_25964 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology