halophFGD

Basic Information

Locus ID: gene-QOZ80_9BG0717310

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: hydroxycinnamoyltransferase activity

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9B	60147680	60148687	-	gene-QOZ80_9BG0717310

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
8.39	36,128.66 Da	40.11	87.19	-0.11

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00646	F-box domain	13	45	2.5E-4	IPR001810
SUPERFAMILY	SSF81383	F-box domain	10	65	6.67E-9	IPR036047
ProSiteProfiles	PS50181	F-box domain profile.	11	47	9.073559	IPR001810

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K13065 (shikimate O-hydroxycinnamoyltransferase [EC:2.3.1.133])

Pathway:

ko00940 (Phenylpropanoid biosynthesis) map00940 (Phenylpropanoid biosynthesis) ko00941 (Flavonoid biosynthesis) map00941 (Flavonoid biosynthesis) ko00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis) map00945 (Stilbenoid, diarylheptanoid and gingerol biosynthesis) ko01100 (Metabolic pathways) map01100 (Metabolic pathways) ko01110 (Biosynthesis of secondary metabolites) map01110 (Biosynthesis of secondary metabolites)

Module:

M00039 (Monolignol biosynthesis, phenylalanine/tyrosine => monolignol)

Reaction:

R01945 (Caffeoyl-CoA + Quinate <=> CoA + Chlorogenate) R02416 (p-Coumaroyl-CoA + Shikimate <=> CoA + 4-Coumaroylshikimate) R07432 (p-Coumaroyl-CoA + Quinate <=> CoA + p-Coumaroyl quinic acid) R07433 (5-O-Caffeoylshikimic acid + CoA <=> Caffeoyl-CoA + Shikimate)

Best hit

Source	Best Hit ID	Description
TAIR	AT5G40050.1	F-box/FBD-like domains containing protein.
RefSeq	XP_010239038.1	F-box protein At3g03040 [Brachypodium distachyon]
Swiss-Prot	Q9LUK1	Putative F-box protein At5g40050 OS=Arabidopsis thaliana OX=3702 GN=At5g40050 PE=4 SV=2
TrEMBL	A0A5J9UKU7	F-box domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_26273 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Amaranthaceae	Chenopodium quinoa	1	CQ.Regalona.r1.3AG0024140
Poaceae	Echinochloa crus-galli	12	AH04.2072, BH04.2135, BH04.2138, BH04.2139, BH04.2145 ... CH02.2882, CH02.2897, CH04.2464, CH04.2731, CH05.2892, CH09.2705, CH09.2710
Poaceae	Eleusine coracana subsp. coracana	15	gene-QOZ80_5AG0376310, gene-QOZ80_5BG0423530 ... gene-QOZ80_9AG0671040, gene-QOZ80_9AG0690870, gene-QOZ80_9AG0690880, gene-QOZ80_9AG0690890, gene-QOZ80_9AG0690920, gene-QOZ80_9AG0690960, gene-QOZ80_9AG0691020, gene-QOZ80_9BG0715300, gene-QOZ80_9BG0717160, gene-QOZ80_9BG0717180, gene-QOZ80_9BG0717190, gene-QOZ80_9BG0717200, gene-QOZ80_9BG0717310
Poaceae	Hordeum vulgare	5	HORVU.MOREX.r3.2HG0110910.1 ... HORVU.MOREX.r3.3HG0313920.1.CDS1, HORVU.MOREX.r3.3HG0313940.1.CDS1, HORVU.MOREX.r3.3HG0313960.1.CDS1, HORVU.MOREX.r3.3HG0313970.1.CDS1
Poaceae	Lolium multiflorum	32	gene-QYE76_007082, gene-QYE76_009132, gene-QYE76_009145 ... gene-QYE76_028966, gene-QYE76_036423, gene-QYE76_036427, gene-QYE76_036428, gene-QYE76_036429, gene-QYE76_036430, gene-QYE76_038430, gene-QYE76_038432, gene-QYE76_038433, gene-QYE76_038601, gene-QYE76_038605, gene-QYE76_039894, gene-QYE76_039897, gene-QYE76_048047, gene-QYE76_049316, gene-QYE76_057696, gene-QYE76_057708, gene-QYE76_058077, gene-QYE76_058373, gene-QYE76_058394, gene-QYE76_059048, gene-QYE76_059050, gene-QYE76_060122, gene-QYE76_060933, gene-QYE76_065809, gene-QYE76_065814, gene-QYE76_065817, gene-QYE76_065822, gene-QYE76_065997
Poaceae	Oryza coarctata	4	Oco07G001790, Oco07G002090, Oco21G006700, Oco22G010260
Poaceae	Oryza sativa	13	LOC_Os02g28600.1, LOC_Os04g16160.1, LOC_Os05g46590.1 ... LOC_Os08g24190.1, LOC_Os10g27400.1, LOC_Os11g33190.1, LOC_Os11g33220.1, LOC_Os11g33250.1, LOC_Os11g42230.1, LOC_Os11g42240.1, LOC_Os11g42270.1, LOC_Os11g42280.1, LOC_Os11g42300.1
Poaceae	Paspalum vaginatum	7	gene-BS78_05G225600, gene-BS78_05G225700 ... gene-BS78_05G225900, gene-BS78_09G116100, gene-BS78_09G116300, gene-BS78_10G066500, gene-BS78_10G066600
Poaceae	Puccinellia tenuiflora	25	Pt_Chr0103367, Pt_Chr0103372, Pt_Chr0201689, Pt_Chr0201691 ... Pt_Chr0201692, Pt_Chr0201698, Pt_Chr0305502, Pt_Chr0404387, Pt_Chr0500107, Pt_Chr0500134, Pt_Chr0500208, Pt_Chr0601131, Pt_Chr0601132, Pt_Chr0601137, Pt_Chr0601140, Pt_Chr0601141, Pt_Chr0601142, Pt_Chr0601144, Pt_Chr0601145, Pt_Chr0601146, Pt_Chr0601147, Pt_Chr0700042, Pt_Chr0700227, Pt_Chr0700413, Pt_Chr0700416
Poaceae	Sporobolus alterniflorus	1	Chr16G004490
Poaceae	Thinopyrum elongatum	4	Tel1E01G132800, Tel2E01G165500, Tel3E01G720600 ... Tel3E01G721500
Poaceae	Triticum dicoccoides	5	gene_TRIDC3AG058470, gene_TRIDC3BG072530 ... gene_TRIDC3BG072570, gene_TRIDC3BG072620, gene_TRIDC7BG014460
Poaceae	Triticum aestivum	20	TraesCS1D02G064600.1.cds1, TraesCS1D02G064900.1 ... TraesCS2B02G089900.1.cds1, TraesCS2D02G073300.1.cds1, TraesCS3A02G411400.1.cds1, TraesCS3A02G455200.1, TraesCS3B02G444800.1.cds1, TraesCS3B02G494000.1, TraesCS3B02G494200.1.cds1, TraesCS3B02G494300.1, TraesCS3B02G494700.1, TraesCS3B02G494800.1.cds1, TraesCS3B02G495200.1.cds1, TraesCS3B02G495300.1.cds1, TraesCS3B02G495500.1, TraesCS3D02G405700.1.cds1, TraesCS3D02G447900.1.cds1, TraesCS3D02G448400.1.cds1, TraesCS3D02G448500.1, TraesCS7D02G020200.1.cds1