Basic Information
Locus ID:
gene-QOZ80_9BG0716380
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 59158867 | 59162431 | + | gene-QOZ80_9BG0716380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 42,060.28 Da | 37.45 | 87.27 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 160 | 238 | 1.6E-5 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 322 | 354 | 0.062 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 358 | 7.32E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 359 | 1.3E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 87 | 125 | 430.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 274 | 313 | 25.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 184 | 222 | 33.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 317 | 356 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 142 | 180 | 0.21 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025827591.1 | SEC12-like protein 2 isoform X1 [Panicum hallii] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5J9V368 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology