Basic Information
Locus ID:
gene-QOZ80_9BG0716170
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 58874887 | 58878897 | - | gene-QOZ80_9BG0716170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 50,127.45 Da | 47.19 | 95.96 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 2 | 41 | 8.4E-20 | IPR041567 |
| SUPERFAMILY | SSF81383 | F-box domain | 2 | 37 | 3.79E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 59 | 383 | 2.55E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 161 | 446 | 6.2E-83 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 146 | 3.7E-22 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 2.0E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 94 | 119 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 345 | 369 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 236 | 260 | 43.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 179 | 202 | 220.0 | IPR006553 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26810.1 | auxin signaling F-box 2. | 0 |
| RefSeq | XP_004979343.1 | transport inhibitor response 1-like protein Os11g0515500 [Setaria italica] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9INN3 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology