Basic Information
Locus ID:
gene-QOZ80_9BG0713390
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 54493598 | 54502350 | - | gene-QOZ80_9BG0713390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 114,285.90 Da | 36.74 | 84.86 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 39 | 316 | 3.50025E-177 | - |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 604 | 818 | 2.2E-43 | IPR011682 |
| Pfam | PF09261 | Alpha mannosidase middle domain | 357 | 449 | 2.5E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 40 | 352 | 8.8E-93 | IPR000602 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 900 | 1006 | 2.4E-13 | IPR041147 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 462 | 1009 | 1.11E-139 | IPR011013 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 357 | 455 | 2.65E-28 | IPR028995 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 28 | 355 | 3.78E-108 | IPR011330 |
| Gene3D | G3DSA:2.70.98.30 | - | 602 | 866 | 9.9E-94 | - |
| Gene3D | G3DSA:2.60.40.1360 | - | 887 | 1014 | 9.9E-35 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 39 | 320 | 7.2E-119 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 399 | 455 | 3.9E-22 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 321 | 398 | 1.9E-30 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1180 | - | 478 | 601 | 4.6E-29 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 357 | 431 | 1.7E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_002449583.1 | alpha-mannosidase At3g26720 [Sorghum bicolor] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A8ZMK7 | Alpha-mannosidase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology