halophFGD

Basic Information

Locus ID: gene-QOZ80_9BG0712600

Species & Taxonomic ID: Eleusine coracana subsp. coracana & 191504

Genome Assembly: GCA_032690845.1

Description: Zinc finger, C3HC4 type (RING finger)

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr9B	53244310	53245230	+	gene-QOZ80_9BG0712600

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.08	31,965.22 Da	56.93	87.61	0.04

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF13920	Zinc finger, C3HC4 type (RING finger)	258	294	1.8E-6	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	242	303	4.4E-8	IPR013083
ProSiteProfiles	PS50089	Zinc finger RING-type profile.	259	293	8.668251	IPR001841

KEGG Pathway

KO Term:

K19042 (E3 ubiquitin-protein ligase BOI and related proteins [EC:2.3.2.27])

Best hit

Source	Best Hit ID	Description
TAIR	AT3G12920.1	SBP (S-ribonuclease binding protein) family protein.
RefSeq	XP_003576000.1	probable BOI-related E3 ubiquitin-protein ligase 3 [Brachypodium distachyon]
Swiss-Prot	Q9LDD1	Probable BOI-related E3 ubiquitin-protein ligase 3 OS=Arabidopsis thaliana OX=3702 GN=BRG3 PE=1 SV=1
TrEMBL	A0A0A9EX28	RING-type domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

No network data available for this species.

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	6	jg22987, jg26135, jg28876, jg30368, jg6367, jg886
Aizoaceae	Mesembryanthemum crystallinum	2	gene_26689, gene_8439
Amaranthaceae	Atriplex hortensis	2	Ah009659, Ah036192
Amaranthaceae	Beta vulgaris	1	BVRB_9g214010
Amaranthaceae	Salicornia bigelovii	4	Sbi_jg12235, Sbi_jg40014, Sbi_jg47203, Sbi_jg55340
Amaranthaceae	Salicornia europaea	2	Seu_jg14323, Seu_jg21476
Amaranthaceae	Suaeda aralocaspica	3	GOSA_00014077, GOSA_00020446, GOSA_00025957
Amaranthaceae	Suaeda glauca	5	Sgl12169, Sgl17541, Sgl55463, Sgl56107, Sgl61440
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016020, gene:ENSEOMG00000036878 ... gene:ENSEOMG00000052361
Amaranthaceae	Chenopodium quinoa	4	CQ.Regalona.r1.1AG0021410, CQ.Regalona.r1.1BG0003060 ... CQ.Regalona.r1.7BG0002840, CQ.Regalona.r1.9AG0021800
Anacardiaceae	Pistacia vera	4	pistato.v30049130, pistato.v30110070, pistato.v30111600 ... pistato.v30167420
Apiaceae	Apium graveolens	3	Ag11G03559, Ag3G02538, Ag7G01810
Arecaceae	Cocos nucifera	6	COCNU_02G016270, COCNU_07G002680, COCNU_10G001850 ... COCNU_15G006290, contig69369843G000010, scaffold002811G000020
Arecaceae	Phoenix dactylifera	9	gene-LOC103703229, gene-LOC103712352, gene-LOC103712804 ... gene-LOC103719247, gene-LOC103721153, gene-LOC103721484, gene-LOC103724352, gene-LOC113463563, gene-LOC120108597
Asparagaceae	Asparagus officinalis	3	AsparagusV1_02.1551.V1.1, AsparagusV1_04.1069.V1.1 ... AsparagusV1_07.2365.V1.1
Asteraceae	Flaveria trinervia	3	Ftri5G08994, Ftri8G18247, Ftri9G03065
Brassicaceae	Arabidopsis thaliana	1	AT4G35070.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10027575m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp7g32840.v2.2
Brassicaceae	Brassica nigra	4	BniB02g087350.2N, BniB03g021030.2N, BniB05g003290.2N ... BniB07g035000.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq07G1712
Casuarinaceae	Casuarina glauca	1	Cgl07G1857
Cymodoceaceae	Cymodocea nodosa	3	gene.Cymno07g10770, gene.Cymno08g01030, gene.Cymno14g06220
Hydrocharitaceae	Thalassia testudinum	5	gene.Thate04g02880, gene.Thate05g02190, gene.Thate08g19030 ... gene.Thate09g10180, gene.Thate09g12050
Nitrariaceae	Nitraria sibirica	2	evm.TU.LG06.178, evm.TU.LG08.319
Plantaginaceae	Plantago ovata	3	Pov_00001664, Pov_00007350, Pov_00020646
Plumbaginaceae	Limonium bicolor	2	Lb2G08457, Lb3G17635
Poaceae	Echinochloa crus-galli	31	AH01.5312, AH01.5316, AH01.5320, AH01.5321, AH04.1522 ... AH04.1523, AH04.1525, AH07.1982, AH07.1988, AH07.1993, BH01.3608, BH03.947, BH04.1546, BH04.1547, BH04.1548, BH07.1952, BH07.1956, BH07.1958, BH09.926, BH09.932, BH09.936, CH04.1757, CH04.1759, CH04.1761, CH04.1763, CH07.1817, CH07.1819, CH07.1821, CH09.1041, CH09.1046, CH09.1048
Poaceae	Eleusine coracana subsp. coracana	13	gene-QOZ80_2AG0132460, gene-QOZ80_2AG0132470 ... gene-QOZ80_2BG0187860, gene-QOZ80_2BG0187870, gene-QOZ80_2BG0194340, gene-QOZ80_4AG0319040, gene-QOZ80_4AG0319050, gene-QOZ80_4BG0350430, gene-QOZ80_4BG0350440, gene-QOZ80_9AG0686360, gene-QOZ80_9BG0712580, gene-QOZ80_9BG0712590, gene-QOZ80_9BG0712600
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.2HG0164840.1, HORVU.MOREX.r3.2HG0164850.1
Poaceae	Lolium multiflorum	5	gene-QYE76_043742, gene-QYE76_043752, gene-QYE76_043757 ... gene-QYE76_043760, gene-QYE76_043762
Poaceae	Oryza coarctata	12	Oco03G011310, Oco04G011700, Oco07G004860, Oco07G004870 ... Oco08G004860, Oco08G004870, Oco14G005790, Oco14G005800, Oco21G006790, Oco21G006800, Oco22G007920, Oco22G007950
Poaceae	Oryza sativa	7	LOC_Os02g32420.1, LOC_Os04g32980.1, LOC_Os04g33030.1 ... LOC_Os07g17370.1, LOC_Os08g02290.1, LOC_Os11g34020.1, LOC_Os11g34080.1
Poaceae	Paspalum vaginatum	12	gene-BS78_02G102800, gene-BS78_02G116100, gene-BS78_K157600 ... gene-BS78_02G121200, gene-BS78_04G148000, gene-BS78_05G160600, gene-BS78_05G160800, gene-BS78_06G079600, gene-BS78_06G079800, gene-BS78_06G079900, gene-BS78_06G080000, gene-BS78_K157800
Poaceae	Puccinellia tenuiflora	2	Pt_Chr0703432, Pt_Chr0703434
Poaceae	Sporobolus alterniflorus	24	Chr06G010840, Chr06G010850, Chr07G016550, Chr09G015510 ... Chr09G015520, Chr13G011410, Chr13G011420, Chr15G012420, Chr16G006170, Chr16G006180, Chr17G005610, Chr17G005620, Chr23G014060, Chr23G014070, Chr25G012150, Chr25G012160, Chr26G005700, Chr26G005710, Chr30G011760, Chr30G011770, Chr31G006290, Chr31G006300, Chr31G006310, Chr31G006320
Poaceae	Thinopyrum elongatum	2	Tel2E01G516700, Tel2E01G516800
Poaceae	Triticum dicoccoides	5	gene_TRIDC2AG042020, gene_TRIDC2AG042030 ... gene_TRIDC2BG044990, gene_TRIDC2BG045010, gene_TRIDC2BG045020
Poaceae	Triticum aestivum	7	TraesCS2A02G290000.1, TraesCS2A02G290100.1 ... TraesCS2B02G306500.1, TraesCS2B02G306600.1, TraesCS2D02G287900.1, TraesCS2D02G288000.1, TraesCS6A02G247500.1
Poaceae	Zea mays	13	Zm00001eb084550_P001, Zm00001eb084560_P001 ... Zm00001eb197780_P001, Zm00001eb197810_P001, Zm00001eb242300_P001, Zm00001eb242320_P001, Zm00001eb242330_P001, Zm00001eb304700_P001, Zm00001eb304970_P001, Zm00001eb351110_P001, Zm00001eb421630_P002, Zm00001eb421690_P001, Zm00001eb429510_P001
Poaceae	Zoysia japonica	13	nbis-gene-18926, nbis-gene-18928, nbis-gene-18931 ... nbis-gene-20868, nbis-gene-20871, nbis-gene-36010, nbis-gene-37977, nbis-gene-37984, nbis-gene-45707, nbis-gene-45709, nbis-gene-57736, nbis-gene-7790, nbis-gene-7796
Poaceae	Zoysia macrostachya	12	Zma_g13594, Zma_g13595, Zma_g16391, Zma_g16392, Zma_g16393 ... Zma_g18926, Zma_g18927, Zma_g18928, Zma_g19617, Zma_g19618, Zma_g21195, Zma_g21197
Portulacaceae	Portulaca oleracea	4	evm.TU.LG02.1820, evm.TU.LG08.1121, evm.TU.LG09.119 ... evm.TU.LG22.867
Posidoniaceae	Posidonia oceanica	4	gene.Posoc01g07990, gene.Posoc05g00230, gene.Posoc05g07190 ... gene.Posoc06g09160
Rhizophoraceae	Bruguiera sexangula	2	evm.TU.Scaffold_1_RagTag.2322, evm.TU.Scaffold_2_RagTag.88
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-5121, nbisL1-mrna-6060
Rhizophoraceae	Ceriops tagal	2	nbisL1-mrna-10996, nbisL1-mrna-17149
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-3241
Rhizophoraceae	Kandelia candel	2	evm.TU.utg000009l.1187, evm.TU.utg000016l.60
Rhizophoraceae	Kandelia obovata	2	Maker00006258, Maker00017359
Rhizophoraceae	Rhizophora apiculata	2	nbisL1-mrna-14123, nbisL1-mrna-4617
Rhizophoraceae	Rhizophora mangle	2	nbisL1-mrna-21160, nbisL1-mrna-22462
Salicaceae	Populus euphratica	4	populus_peu08697, populus_peu15383, populus_peu33031 ... populus_peu36654
Solanaceae	Lycium barbarum	2	gene-LOC132599333, gene-LOC132605265
Solanaceae	Solanum chilense	2	SOLCI006584000, SOLCI007490200
Solanaceae	Solanum pennellii	2	gene-LOC107001770, gene-LOC107027228
Tamaricaceae	Reaumuria soongarica	2	STRG.31311_chr11_+, gene_7964
Tamaricaceae	Tamarix chinensis	4	TC10G0138, TC10G0139, TC12G0766, TC12G0767
Zosteraceae	Zostera marina	2	Zosma05g08660.v3.1, Zosma05g08670.v3.1