Basic Information
Locus ID:
gene-QOZ80_9BG0711550
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
LYK4
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 51400791 | 51402917 | + | gene-QOZ80_9BG0711550 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 74,473.72 Da | 46.00 | 81.74 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01476 | LysM domain | 215 | 252 | 0.008 | IPR018392 |
| Pfam | PF01476 | LysM domain | 138 | 188 | 0.039 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 432 | 679 | 3.6E-27 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 382 | 683 | 9.09E-49 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 383 | 469 | 4.0E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 471 | 693 | 1.5E-37 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 136 | 187 | 8.858833 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 402 | 684 | 26.181128 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 348 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 285 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 320 | 366 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 262 | 285 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G23770.1 | protein kinase family protein / peptidoglycan-binding LysM domain-containing protein. | 0 |
| RefSeq | XP_039777306.1 | lysM domain receptor-like kinase 4 [Panicum virgatum] | 0 |
| O64825 | LysM domain receptor-like kinase 4 OS=Arabidopsis thaliana OX=3702 GN=LYK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A3L6Q285 | LysM domain receptor-like kinase 4 OS=Panicum miliaceum OX=4540 GN=C2845_PM17G11510 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology