Basic Information
Locus ID:
gene-QOZ80_9BG0700680
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 9304658 | 9306083 | - | gene-QOZ80_9BG0700680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.67 | 42,508.68 Da | 46.19 | 70.11 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 294 | 366 | 4.6E-14 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 291 | 371 | 2.42E-21 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 248 | 374 | 3.1E-23 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 293 | 368 | 1.1E-19 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 292 | 372 | 16.909462 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 0 |
| RefSeq | XP_034569764.1 | uncharacterized protein LOC117834253 [Setaria viridis] | 0 |
| P28644 | 28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1 | 0 | |
| TrEMBL | K3ZM36 | RRM domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology