Basic Information
Locus ID:
gene-QOZ80_9BG0696010
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9B | 2840489 | 2840932 | + | gene-QOZ80_9BG0696010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.99 | 16,473.36 Da | 30.39 | 112.65 | 0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 81 | 125 | 2.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 76 | 133 | 2.28E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 39 | 129 | 4.7E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 83 | 124 | 1.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 83 | 125 | 12.371254 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039840467.1 | probable E3 ubiquitin-protein ligase ATL45 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9UW71 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_29891 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH04.71, CH04.137, CH05.56 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_9AG0672430, gene-QOZ80_9BG0696010 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0464570.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_003591 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02220.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_05G012300, gene-BS78_08G020300 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr07G022220 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G258000 |
| Poaceae | Triticum aestivum | 2 | TraesCS5A02G147900.1.cds1, TraesCS5D02G144900.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb195260_P001 |