Basic Information
Locus ID:
gene-QOZ80_9AG0692270
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 44509563 | 44513991 | - | gene-QOZ80_9AG0692270 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.88 | 65,835.23 Da | 40.50 | 71.91 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 198 | 395 | 3.4845E-103 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 411 | 495 | 1.2E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 508 | 577 | 2.3E-12 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 206 | 375 | 1.5E-15 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 244 | 516 | 3.91E-47 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 394 | 580 | 3.5E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 163 | 393 | 1.7E-84 | IPR027417 |
| SMART | SM00487 | ultradead3 | 200 | 404 | 1.6E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 414 | 496 | 6.8E-25 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 198 | 425 | 3.4E-85 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 212 | 388 | 21.172514 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 393 | 536 | 17.664326 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 327 | 336 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 133 | 172 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_004980856.3 | ATP-dependent DNA helicase Q-like 1 [Setaria italica] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UK77 | ATP-dependent DNA helicase OS=Eragrostis curvula OX=38414 GN=EJB05_25964 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology