Basic Information
Locus ID:
gene-QOZ80_9AG0688770
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 39235479 | 39240044 | - | gene-QOZ80_9AG0688770 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 42,281.57 Da | 35.28 | 87.81 | 0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 324 | 356 | 0.062 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 162 | 239 | 3.4E-5 | IPR024977 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 98 | 360 | 6.77E-31 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 12 | 362 | 6.2E-61 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 224 | 50.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 89 | 127 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 182 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 358 | 0.0018 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 315 | 24.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 192 | 233 | 8.570195 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G50550.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_025827591.1 | SEC12-like protein 2 isoform X1 [Panicum hallii] | 0 |
| Q39221 | SEC12-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=STL2P PE=1 SV=4 | 0 | |
| TrEMBL | A0A5J9V368 | ANAPC4_WD40 domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_21951 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology