Basic Information
Locus ID:
gene-QOZ80_9AG0687680
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Short Name:
AFB3
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 37347642 | 37351236 | + | gene-QOZ80_9AG0687680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.35 | 63,845.17 Da | 43.57 | 97.17 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 61 | 107 | 4.2E-23 | IPR041101 |
| Pfam | PF18511 | F-box | 2 | 41 | 9.1E-20 | IPR041567 |
| SUPERFAMILY | SSF52047 | RNI-like | 26 | 530 | 1.73E-32 | - |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 40 | 3.3E-16 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 41 | 576 | 1.1E-167 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 309 | 332 | 450.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 475 | 499 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 124 | 149 | 58.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 99 | 123 | 87.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 283 | 308 | 190.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 366 | 390 | 43.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 426 | 449 | 86.0 | IPR006553 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12820.1 | auxin signaling F-box 3. Auxin receptor involved in primary and lateral root growth inhibition in response to nitrate. Target of miR393. Induced by nitrate in primary roots. | 0 |
| RefSeq | XP_004979343.1 | transport inhibitor response 1-like protein Os11g0515500 [Setaria italica] | 0 |
| Q2R3K5 | Transport inhibitor response 1-like protein Os11g0515500 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0515500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A9INN3 | F-box domain-containing protein OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology