Basic Information
Locus ID:
gene-QOZ80_9AG0687310
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the Casparian strip membrane proteins (CASP) family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 36785136 | 36787259 | + | gene-QOZ80_9AG0687310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.68 | 23,255.32 Da | 36.30 | 95.07 | 0.30 |
Protein Domain:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006663083.1 | CASP-like protein 1U2 [Oryza brachyantha] | 0 |
| Q2R0D1 | CASP-like protein 1U2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0649700 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UNP8 | CASP-like protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_27674 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | BH04.1452, CH04.1644, CH04.1646 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_9AG0687300, gene-QOZ80_9AG0687310 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0085320.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_061534 |
| Poaceae | Oryza coarctata | 2 | Oco22G010470, Oco22G010580 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g42970.1 |
| Poaceae | Paspalum vaginatum | 3 | gene-BS78_05G132200, gene-BS78_05G154000 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0204784, Pt_Ctg00236 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G627200, Tel7E01G992000 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G383800.1.cds1, TraesCS1B02G410400.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb113200_P001, Zm00001eb170450_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-44288 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g18036 |