Basic Information
Locus ID:
gene-QOZ80_9AG0687140
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Alpha mannosidase, middle domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 36238590 | 36247168 | - | gene-QOZ80_9AG0687140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 114,539.21 Da | 36.53 | 84.98 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10810 | GH38N_AMII_LAM_like | 41 | 318 | 3.42716E-177 | - |
| Pfam | PF09261 | Alpha mannosidase middle domain | 359 | 451 | 2.5E-21 | IPR015341 |
| Pfam | PF01074 | Glycosyl hydrolases family 38 N-terminal domain | 42 | 354 | 8.9E-93 | IPR000602 |
| Pfam | PF07748 | Glycosyl hydrolases family 38 C-terminal domain | 606 | 820 | 1.5E-43 | IPR011682 |
| Pfam | PF17677 | Glycosyl hydrolases family 38 C-terminal beta sandwich domain | 902 | 1008 | 1.3E-13 | IPR041147 |
| SUPERFAMILY | SSF88713 | Glycoside hydrolase/deacetylase | 30 | 357 | 2.95E-108 | IPR011330 |
| SUPERFAMILY | SSF88688 | Families 57/38 glycoside transferase middle domain | 359 | 457 | 2.42E-28 | IPR028995 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 460 | 1011 | 1.52E-139 | IPR011013 |
| Gene3D | G3DSA:2.70.98.30 | - | 604 | 868 | 1.2E-93 | - |
| Gene3D | G3DSA:3.20.110.10 | Glycoside hydrolase 38, N terminal domain | 41 | 322 | 7.2E-119 | IPR027291 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 323 | 400 | 1.9E-30 | IPR037094 |
| Gene3D | G3DSA:1.20.1270.50 | Glycoside hydrolase family 38, central domain | 401 | 457 | 3.9E-22 | IPR037094 |
| Gene3D | G3DSA:2.60.40.1360 | - | 889 | 1016 | 5.8E-35 | - |
| Gene3D | G3DSA:2.60.40.1180 | - | 480 | 603 | 3.5E-28 | IPR013780 |
| SMART | SM00872 | Alpha_mann_mid_2 | 359 | 433 | 1.7E-22 | IPR015341 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G13980.1 | Glycosyl hydrolase family 38 protein. | 0 |
| RefSeq | XP_025827081.1 | probable alpha-mannosidase At5g13980 [Panicum hallii] | 0 |
| Q8LPJ3 | Probable alpha-mannosidase At5g13980 OS=Arabidopsis thaliana OX=3702 GN=At5g13980 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0A8ZMK7 | Alpha-mannosidase OS=Arundo donax OX=35708 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology