Basic Information
Locus ID:
gene-QOZ80_9AG0687120
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 36169033 | 36170106 | + | gene-QOZ80_9AG0687120 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.86 | 35,681.19 Da | 51.20 | 70.09 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16448 | RING-H2 | 273 | 315 | 2.91685E-11 | - |
| Pfam | PF13639 | Ring finger domain | 272 | 315 | 1.2E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 265 | 319 | 3.28E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 250 | 321 | 2.0E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 273 | 314 | 7.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 273 | 315 | 11.795887 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 57 | 72 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 22 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 38 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039824240.1 | uncharacterized protein LOC120686137 [Panicum virgatum] | 0 |
| TrEMBL | A0A8T0P884 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_8NG105100 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology