Basic Information
Locus ID:
gene-QOZ80_9AG0683790
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 30082957 | 30098695 | + | gene-QOZ80_9AG0683790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.81 | 83,109.33 Da | 38.66 | 87.75 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 442 | 690 | 1.92219E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 615 | 649 | 4.1E-9 | IPR001680 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 21 | 138 | 5.1E-14 | IPR001245 |
| Pfam | PF00069 | Protein kinase domain | 143 | 275 | 3.4E-17 | IPR000719 |
| Pfam | PF00400 | WD domain, G-beta repeat | 570 | 607 | 2.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 529 | 565 | 2.9E-4 | IPR001680 |
| SUPERFAMILY | SSF49354 | PapD-like | 295 | 424 | 2.59E-5 | IPR008962 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 5 | 282 | 2.56E-52 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 527 | 700 | 3.48E-42 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 436 | 566 | 8.06E-8 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 8 | 141 | 1.2E-24 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 142 | 288 | 3.9E-28 | - |
| Gene3D | G3DSA:2.60.40.10 | Immunoglobulins | 290 | 413 | 1.3E-6 | IPR013783 |
| Gene3D | G3DSA:2.130.10.10 | - | 435 | 730 | 3.3E-53 | IPR015943 |
| SMART | SM00320 | WD40_4 | 652 | 690 | 0.21 | IPR001680 |
| SMART | SM00320 | WD40_4 | 526 | 565 | 2.2E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 567 | 607 | 1.8E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 610 | 649 | 7.3E-11 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 574 | 608 | 11.89286 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 533 | 565 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 19 | 283 | 20.456858 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 617 | 651 | 13.079218 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 574 | 608 | 14.384962 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 533 | 565 | 9.941962 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 617 | 658 | 16.122709 | IPR001680 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 25 | 46 | - | IPR017441 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 677 | 691 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 636 | 650 | 1.1E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 594 | 608 | 1.1E-5 | IPR020472 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23180.1 | cysteine-rich RLK (RECEPTOR-like protein kinase) 10. Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) | 0 |
| RefSeq | XP_052135855.1 | uncharacterized protein LOC127754387 isoform X2 [Oryza glaberrima] | 0 |
| Q8GYA4 | Cysteine-rich receptor-like protein kinase 10 OS=Arabidopsis thaliana OX=3702 GN=CRK10 PE=1 SV=3 | 0 | |
| TrEMBL | A0A3B6N163 | Protein kinase domain-containing protein OS=Triticum aestivum OX=4565 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology