Basic Information
Locus ID:
gene-QOZ80_9AG0681710
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
GAG-pre-integrase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 25326300 | 25331078 | - | gene-QOZ80_9AG0681710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.25 | 170,759.05 Da | 43.38 | 77.43 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09272 | RNase_HI_RT_Ty1 | 1392 | 1531 | 6.59353E-68 | - |
| Pfam | PF13976 | GAG-pre-integrase domain | 622 | 688 | 8.1E-14 | IPR025724 |
| Pfam | PF07727 | Reverse transcriptase (RNA-dependent DNA polymerase) | 1064 | 1307 | 7.0E-99 | IPR013103 |
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 225 | 359 | 5.4E-10 | - |
| Pfam | PF00098 | Zinc knuckle | 434 | 450 | 3.2E-6 | IPR001878 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 416 | 459 | 1.09E-9 | IPR036875 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 718 | 829 | 1.02E-24 | IPR012337 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 1064 | 1498 | 6.67E-31 | IPR043502 |
| Gene3D | G3DSA:4.10.60.10 | - | 410 | 464 | 5.1E-8 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 697 | 758 | 7.0E-7 | IPR036397 |
| Gene3D | G3DSA:3.30.420.10 | - | 759 | 835 | 9.7E-16 | IPR036397 |
| SMART | SM00343 | c2hcfinal6 | 434 | 450 | 3.1E-5 | IPR001878 |
| ProSiteProfiles | PS50994 | Integrase catalytic domain profile. | 763 | 827 | 9.772306 | IPR001584 |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 435 | 450 | 10.42741 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 171 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 961 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 387 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 923 | 992 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 171 | - | - |
| Coils | Coil | Coil | 90 | 110 | - | - |
| Coils | Coil | Coil | 8 | 37 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23160.2 | - | 0 |
| RefSeq | XP_040254454.2 | LOW QUALITY PROTEIN: uncharacterized protein LOC109774810 [Aegilops tauschii subsp. strangulata] | 0 |
| P10978 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1 | 0 | |
| TrEMBL | Q9AY40 | Putative gag-pol polyprotein OS=Oryza sativa subsp. japonica OX=39947 GN=OSJNBa0027P10.24 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Asteraceae | Flaveria trinervia | 4 | Ftri18G33038, Ftri6G26243, Ftri6G34149, FtriNA26240 |
| Brassicaceae | Brassica nigra | 3 | BniB02g044040.2N, BniB05g046390.2N, BniB07g028240.2N |
| Plantaginaceae | Plantago ovata | 2 | Pov_00029076, Pov_00039561 |
| Poaceae | Echinochloa crus-galli | 7 | AH01.168, AH01.4944, AH04.1262, AH05.424, AH07.1449 ... |
| Poaceae | Eleusine coracana subsp. coracana | 85 | gene-QOZ80_1AG0019300, gene-QOZ80_1AG0021820 ... |
| Poaceae | Lolium multiflorum | 12 | gene-QYE76_002090, gene-QYE76_004107, gene-QYE76_010998 ... |
| Poaceae | Oryza coarctata | 2 | Oco06G010700, Oco21G004780 |
| Poaceae | Sporobolus alterniflorus | 17 | Chr01G029280, Chr04G018110, Chr04G029980, Chr05G019600 ... |
| Poaceae | Zoysia japonica | 66 | nbis-gene-12256, nbis-gene-12257, nbis-gene-1525 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3359 |