Basic Information
Locus ID:
gene-QOZ80_9AG0672420
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 2321119 | 2321556 | - | gene-QOZ80_9AG0672420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.70 | 16,353.62 Da | 50.06 | 88.07 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 87 | 132 | 1.4E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 88 | 137 | 2.87E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 137 | 1.6E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 89 | 131 | 1.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 89 | 132 | 12.194218 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15530.6 | - | 0 |
| RefSeq | XP_039778951.1 | RING finger protein 215-like [Panicum virgatum] | 0 |
| P87139 | Uncharacterized RING finger protein C57A7.09 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC57A7.09 PE=1 SV=1 | 0 | |
| TrEMBL | A0A811QHK8 | RING-type domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS42153 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_9AG0672420 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_003646, gene-QYE76_003649 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g02210.1 |
| Poaceae | Paspalum vaginatum | 6 | gene-BS78_05G012200, gene-BS78_05G012500 ... |
| Poaceae | Zea mays | 1 | Zm00001eb195250_P001 |