Basic Information
Locus ID:
gene-QOZ80_9AG0671310
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| chr9A | 1400442 | 1410412 | - | gene-QOZ80_9AG0671310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.04 | 79,042.43 Da | 39.32 | 86.26 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18015 | DEXHc_RecQ1 | 72 | 280 | 5.01434E-131 | - |
| CDD | cd18794 | SF2_C_RecQ | 281 | 417 | 5.69302E-70 | - |
| Pfam | PF16124 | RecQ zinc-binding | 420 | 476 | 2.8E-11 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 93 | 260 | 1.4E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 608 | 670 | 2.3E-5 | IPR002121 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 305 | 407 | 3.5E-16 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 129 | 424 | 1.1E-56 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 481 | 586 | 7.0E-24 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 49 | 280 | 1.7E-90 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 604 | 676 | 2.4E-11 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 281 | 478 | 2.8E-64 | IPR027417 |
| SMART | SM00490 | helicmild6 | 327 | 408 | 6.7E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 86 | 289 | 9.2E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 83 | 498 | 3.6E-158 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 450 | 19.875179 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 98 | 273 | 22.574604 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 601 | 681 | 11.131792 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 672 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 706 | - | - |
| Coils | Coil | Coil | 597 | 624 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.1 | RECQ helicase L2. Encodes a (d)NTP-dependent 3'->5' DNA helicase. This protein can also disrupt D loop structures and may mediate branch migration of Holliday junctions when tested in vitro. The unwinding activity of the enzyme depends on the presence of divalent cations (Mg2+, Mn2+, or Ca2+, but not Zn2+).(d)NTPs are also required with ATP and dATP supporting the greatest amount of DNA unwinding in vitro. | 0 |
| RefSeq | NP_001168975.1 | uncharacterized protein LOC100382802 [Zea mays] | 0 |
| Q9FT73 | ATP-dependent DNA helicase Q-like 2 OS=Arabidopsis thaliana OX=3702 GN=RECQL2 PE=1 SV=1 | 0 | |
| TrEMBL | C0PAU0 | ATP-dependent DNA helicase OS=Zea mays OX=4577 GN=100382802 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology