Basic Information
Locus ID:
gene-QOZ80_8BG0668950
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
IBR domain, a half RING-finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 62321608 | 62323119 | - | gene-QOZ80_8BG0668950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.16 | 55,690.97 Da | 53.83 | 71.95 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 210 | 270 | 5.4E-9 | IPR002867 |
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 293 | 329 | 2.0E-5 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 195 | 1.24E-12 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 288 | 332 | 1.18E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 219 | 272 | 7.24E-5 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 208 | 5.3E-12 | IPR013083 |
| Gene3D | G3DSA:1.20.120.1750 | - | 266 | 493 | 1.5E-30 | - |
| SMART | SM00647 | ibrneu5 | 203 | 270 | 2.0E-9 | IPR002867 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 128 | 178 | 8.683004 | IPR001841 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 124 | 344 | 28.117649 | IPR044066 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 318 | 327 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 123 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 125 | - | - |
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G31510.1 | IBR domain-containing protein. | 0 |
| RefSeq | XP_034601390.1 | probable E3 ubiquitin-protein ligase ARI7 [Setaria viridis] | 0 |
| Q84RR0 | Probable E3 ubiquitin-protein ligase ARI7 OS=Arabidopsis thaliana OX=3702 GN=ARI7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9SZT2 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_47704 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0602s00007.v1.0 |
| Poaceae | Echinochloa crus-galli | 4 | BH08.2499, BH09.577, CH08.2686, CH08.2687 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8BG0668950 |