Basic Information
Locus ID:
gene-QOZ80_8BG0665950
Species & Taxonomic ID:
Eleusine coracana subsp. coracana & 191504
Genome Assembly:
GCA_032690845.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8B | 60205349 | 60209847 | + | gene-QOZ80_8BG0665950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.13 | 48,360.46 Da | 46.53 | 69.60 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12354 | RRM3_TIA1_like | 278 | 352 | 5.04409E-30 | - |
| CDD | cd12619 | RRM2_PUB1 | 155 | 229 | 2.12529E-51 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 280 | 346 | 5.1E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 137 | 9.1E-13 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 156 | 226 | 5.0E-18 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 270 | 360 | 2.31E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 67 | 232 | 1.16E-43 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 153 | 246 | 1.4E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 4 | 152 | 1.0E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 254 | 356 | 1.6E-21 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 70 | 139 | 8.9E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 155 | 228 | 7.0E-23 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 279 | 348 | 6.9E-15 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 155 | 228 | 0.27 | IPR003954 |
| SMART | SM00361 | rrm2_1 | 279 | 348 | 5.3 | IPR003954 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 154 | 232 | 16.943573 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 143 | 15.374476 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 352 | 15.476809 | IPR000504 |
| Coils | Coil | Coil | 8 | 28 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_004973927.1 | oligouridylate-binding protein 1B [Setaria italica] | 0 |
| Q6YZW2 | RNA-binding protein 208 OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-208 PE=1 SV=1 | 0 | |
| TrEMBL | A0A835A262 | Oligouridylate-binding protein 1-like OS=Digitaria exilis OX=1010633 GN=HU200_065738 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology